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# CITATION file created with {cffr} R package
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cff-version: 1.2.0
message: 'To cite package "jellyfisher" in publications use:'
type: software
license: MIT
title: 'jellyfisher: Visualize Spatiotemporal Tumor Evolution with Jellyfish Plots'
version: 1.0.4
doi: 10.32614/CRAN.package.jellyfisher
abstract: Generates interactive Jellyfish plots to visualize spatiotemporal tumor
  evolution by integrating sample and phylogenetic trees into a unified plot. This
  approach provides an intuitive way to analyze tumor heterogeneity and evolution
  over time and across anatomical locations. The Jellyfish plot visualization design
  was first introduced by Lahtinen, Lavikka, et al. (2023, <https://doi.org/10.1016/j.ccell.2023.04.017>).
  This package also supports visualizing ClonEvol results, a tool developed by Dang,
  et al. (2017, <https://doi.org/10.1093/annonc/mdx517>), for analyzing clonal evolution
  from multi-sample sequencing data. The 'clonevol' package is not available on CRAN
  but can be installed from its GitHub repository (<https://github.com/hdng/clonevol>).
authors:
- family-names: Lavikka
  given-names: Kari
  email: kari.lavikka@helsinki.fi
  orcid: https://orcid.org/0000-0002-4163-4945
repository: https://hautaniemilab.r-universe.dev
repository-code: https://github.com/HautaniemiLab/jellyfisher
commit: 26a196ac25d1b5e93d13249b90bf53d47804f41d
url: https://hautaniemilab.github.io/jellyfisher/
contact:
- family-names: Lavikka
  given-names: Kari
  email: kari.lavikka@helsinki.fi
  orcid: https://orcid.org/0000-0002-4163-4945