{
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  "Package": "jellyfisher",
  "Title": "Visualize Spatiotemporal Tumor Evolution with Jellyfish Plots",
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  "Authors@R": "person(\"Kari\", \"Lavikka\", , \"kari@karilavikka.fi\", role = c(\"cph\", \"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-4163-4945\"))",
  "Description": "Generates interactive Jellyfish plots to visualize\nspatiotemporal tumor evolution by integrating sample and\nphylogenetic trees into a unified plot. This approach provides\nan intuitive way to analyze tumor heterogeneity and evolution\nover time and across anatomical locations. The Jellyfish plot\nvisualization design was first introduced by Lahtinen, Lavikka,\net al. (2023, <doi:10.1016/j.ccell.2023.04.017>). This package\nalso supports visualizing ClonEvol results, a tool developed by\nDang, et al. (2017, <doi:10.1093/annonc/mdx517>), for analyzing\nclonal evolution from multi-sample sequencing data. The\n'clonevol' package is not available on CRAN but can be\ninstalled from its GitHub repository\n(<https://github.com/hdng/clonevol>).",
  "License": "MIT + file LICENSE",
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  "URL": "https://github.com/HautaniemiLab/jellyfisher,\nhttps://hautaniemilab.github.io/jellyfisher/",
  "BugReports": "https://github.com/HautaniemiLab/jellyfisher/issues",
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  "biocViews": "Visualization, Phylogenetics, Software, Spatial",
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  "Repository": "https://hautaniemilab.r-universe.dev",
  "Date/Publication": "2026-08-21 06:32:25 UTC",
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  "Packaged": {
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    "User": "root"
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  "Author": "Kari Lavikka [cph, aut, cre] (ORCID:\n<https://orcid.org/0000-0002-4163-4945>)",
  "Maintainer": "Kari Lavikka <kari@karilavikka.fi>",
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    "phylogenetics",
    "software",
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    "bioinformatics",
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      ]
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      "topics": [
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    {
      "page": "jellyfisher",
      "title": "Creates a Jellyfish plot",
      "topics": [
        "jellyfisher"
      ]
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      "title": "Jellyfisher example data",
      "topics": [
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      ]
    },
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      "title": "Shiny bindings for jellyfisher",
      "topics": [
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        "jellyfisherOutput",
        "renderJellyfisher"
      ]
    },
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      "title": "Filter Jellyfish tables by patient",
      "topics": [
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      ]
    },
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      "title": "Set parents for samples",
      "topics": [
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      ]
    },
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      "topics": [
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    },
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